PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34859
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 246aa    MW: 26121.2 Da    PI: 8.4082
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34859genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000795117123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC+ C+k Fs+   L  H  +H
  Tp57577_TGAC_v2_mRNA34859  95 HKCSVCNKAFSSYQALGGHKASH 117
                                79**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01995117IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.57795117IPR007087Zinc finger, C2H2
PfamPF139127.6E-1395119IPR007087Zinc finger, C2H2
SuperFamilySSF576673.05E-895117No hitNo description
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576673.05E-8147174No hitNo description
SMARTSM003550.19152174IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411152174IPR007087Zinc finger, C2H2
PfamPF139124.4E-13152176IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAMEALNSPT TATPFTPFEE PNHGYIDAAP WTKGKRSKRS RMDQSSCTEE EYLALCLIML  60
ARSGNNNNNN KIITLPTAVK PALSDTESAP AKLSHKCSVC NKAFSSYQAL GGHKASHRKS  120
AVMSTGEDHQ TTTTSSAVTT SSAASNGKIK SHECSICHKS FPTGQALGGH KRCHYEGGAG  180
AGAGGGNSTV TASEVGSSHS QHRDFDLNLP AFPDFSKKFF VDDEVSSPHP AAKKPCLFKI  240
EIPQY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4439591e-177GU443959.1 Trifolium repens clone BAC 11l07 cyclin d, calcium ATPase, E3 ubiquitin ligase, galactose oxidase, adeninephosphoribosyl transferase, kruppel-like zinc finger protein, and cysteine protease genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461770.11e-122C2H2-type zinc finger protein
TrEMBLD3YBD11e-145D3YBD1_TRIRP; Kruppel-like zinc finger protein
STRINGGLYMA04G04760.11e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.15e-52salt tolerance zinc finger